Hats off to everyone who published work in 2022. Catch up on all the great research that came out of CBIOMES last year.
Compiled by Helen Hill for CBIOMES. Any missing? Email hlh@mit.edu
2022
Mohammad M. Amirian, Andrew J. Irwin, Zoe V. Finkel (2022), Extending the Monod Model of Microbial Growth with Memory, Frontiers in Marine Science, doi: 10.3389/fmars.2022.963734
Archibald, K., C. Laufkotter, S. Dutkiewicz, H. Moeller (2022), Thermal responses in global marine planktonic food webs mediated through temperature effects on metabolism, JGR Oceans, doi: 10.1029/2022JC018932
Alberto Baudena, Enrico Ser-Giacomi, Isabel Jalón-Rojas, François Galgani and Maria Luiza Pedrotti (2022), The streaming of plastic in the Mediterranean Sea, Nature Communications, doi: 10.1038/s41467-022-30572-5
Robert J. W. Brewin, Giorgio Dall’Olmo, John Gittings, Xuerong Sun, Priscila K. Lange, Dionysios E. Raitsos, Heather A. Bouman, Ibrahim Hoteit, Jim Aiken, Shubha Sathyendranath (2022), A Conceptual Approach to Partitioning a Vertical Profile of Phytoplankton Biomass Into Contributions From Two Communities, JGR Oceans, doi: 10.1029/2021JC018195
Gregory L. Britten (2022), Extreme value distributions describe interannual variability in the seasonal North Atlantic phytoplankton bloom, Limnology and Oceanography Letters, doi: 10.1002/lol2.10247
B.B. Cael, G.L. Britten et al (2022), Climate nonlinearities: selection, uncertainty, projections, and damages, Environmental Research Letters, doi: 10.1088/1748-9326/ac8238
Dustin Carroll et al, 2022, Attribution of space-time variability in global-ocean dissolved inorganic carbon, Global Biogeochemical Cycles, doi: 10.1029/2021GB007162 [Stephanie Dutkiewicz, Jonathan M. Lauderdale, Chris Hill, Oliver Jahn]
John R. Casey, Rene M. Boiteau, Martin Engqvist, Zoe V. Finkel, Gang Li, Justin Liefer, Christian L. Mueller, Nathalie Munoz, and Mick Follows (2022), Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology, Science Advances, doi: 10.1126/sciadv.abl4930
Ophélie Da Silva, Sakina-Dorothée Ayata, Enrico Ser-Giacomi, Jade Leconte, Eric Pelletier, Cécile Fauvelot, Mohammed-Amin Madoui, Lionel Guidi, Fabien Lombard, Lucie Bittner (2022), Genomic differentiation of three pico-phytoplankton species in the Mediterranean Sea, Environmental Microbiology, doi: 10.1111/1462-2920.16171
Colomban de Vargas et al (2022), Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale, Front. Mar. Sci., doi: 10.3389/fmars.2022.936972 [Michael. J. Follows]
Vinitha Ebenezer, Ying-Yu Hu, Olga Carnicer, Andrew J. Irwin, Michael J. Follows, Zoe V. Finkel (2022), Elemental and macromolecular composition of the marine Chloropicophyceae, a major group of oceanic photosynthetic picoeukaryotes, Limnology and Oceanography, doi: 10.1002/lno.12013
Katja Fennel, Jann Paul Mattern, Scott C. Doney, Laurent Bopp, Andrew M. Moore, Bin Wang and Liuqian Yu (2022), Ocean biogeochemical modelling, Nature Reviews Methods Primers, doi: 10.1038/s43586-022-00154-2
Follett, Christopher L., Stephanie Durkiewicz, François Ribalet, Emily Zakem, David Caron, E. Virginia Armbrust, Michael J. Follows (2022), Trophic interactions with heterotrophic bacteria limit the range of Prochlorococcus, Proceedings National Academy of Science, doi: 10.1073/pnas.2110993118
Mukund Gupta, Richard G. Williams, Jonathan M. Lauderdale, Oliver Jahn, Christopher N. Hill, Stephanie Dutkiewicz, and Michael J. Follows (2022), A nutrient relay sustains subtropical ocean productivity, PNAS, doi: 10.1073/pnas.2206504119
Ying-Yu Hu, Andrew Irwin, Zoe Finkel (2022), Improving Quantification of Particulate Phosphorus, Limnology and Oceanography: Methods, doi: 10.1002/lom3.10517
Sangwon Hyun, Aditya Mishra, Christopher L. Follett, Bror Jonsson, Gemma Kulk, Gael Forget, Marie-Fanny Racault, Thomas Jackson, Stephanie Dutkiewicz, Christian L. Müller and Jacob Bien (2022), Ocean mover’s distance: using optimal transport for analysing oceanographic data, Proceedings of the Royal Society A, doi: 10.1098/rspa.2021.0875
Keisuke Inomura, Curtis Deutsch, Oliver Jahn, Stephanie Dutkiewicz and Michael J. Follows (2022), Global patterns in marine organic matter stoichiometry driven by phytoplankton ecophysiology, Nature Geoscience, doi: 10.1038/s41561-022-01066-2
Salvador J. Jorgensen et al (2022), Emergent research and priorities for shark and ray conservation, Endangered Species Research, doi: 10.3354/esr01169 [Greg Britten]
Žarko Kovač and Shubha Sathyendranath (2022), Fragility of Marine Photosynthesis, Front. Mar. Sci., doi: 10.3389/fmars.2022.963395
Térence Legrand, Anne Chenuil, Enrico Ser-Giacomi, Sophie Arnaud-Haond, Nicolas Bierne & Vincent Rossi (2022), Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla, Nature Communications, doi: 10.1038/s41467-022-33499-z
Zhengke Li, Yong Zhang, Wei Li, Andrew J Irwin, Zoe V Finkel (2022), Conservation and architecture of housekeeping genes in the model marine diatom Thalassiosira pseudonana, New Phytologist, doi: 10.1111/nph.18039
Inès Mangolte, Marina Lévy, Stephanie Dutkiewicz, Sophie Clayton, Oliver Jahn (2022), Plankton community response to fronts: winners and losers, Journal of Plankton Research, doi: 10.1093/plankt/fbac010
Maniaci, G., Brewin, R.J.W., Sathyendranath, S. (2022) Concentration and distribution of phytoplankton nitrogen and carbon in the Northwest Atlantic and Indian Ocean: A simple model with applications in satellite remote sensing, Frontiers in Marine Science, doi: 10.3389/fmars.2022.1035399
Adam C. Martiny et al (2022), Marine phytoplankton resilience may moderate oligotrophic ecosystem responses and biogeochemical feedbacks to climate change, Limnology and Oceanography, doi: 10.1002/lno.12029 [Greg Britten]
Jann Paul Mattern, Kristof Glauninger, Gregory L. Britten, John R. Casey, Sangwon Hyun, Zhen Wu, E. Virginia Armbrust, Zaid Harchaoui, Francois Ribalet (2022), A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series, PLoS Computational Biology, doi: 10.1371/journal.pcbi.1009733
Simona Meiler, Gregory L. Britten, Stephanie Dutkiewicz, Mary Rose Gradoville, Pia H. Moisander, Oliver Jahn, Michael J. Follows (2022), Constraining uncertainties of diazotroph biogeography from nifH gene abundance, Limnology and Oceanography, doi: 10.1002/lno.12036
Daniel Muratore, Angela K. Boysen, Matthew J. Harke, Kevin W. Becker, John R. Casey et al (2022), Complex marine microbial communities partition metabolism of scarce resources over the diel cycle, Nature Ecology & Evolution, doi: 10.1038/s41559-021-01606-w
Crispin M. Mutshinda, Aditya Mishra, Zoe V. Finkel, Claire E. Widdicombe & Andrew J. Irwin (2022), Bayesian two-part modeling of phytoplankton biomass and occurrence, Hydrobiologia, doi: 10.1007/s10750-021-04789-2
Orkney, A., Sathyendranath, S., Jackson, T., Porter, M., & Bouman, H. (2022), Atlantic inflow is the primary driver of remotely sensed autumn blooms in the Barents Sea, Marine Ecology Progress Series, doi: 10.3354/meps14201
Dalit Roth-Rosenberg, Dikla Aharonovich, Anne-Willem Omta, Michael J. Follows, Daniel Sher (2022), Dynamic macromolecular composition and high exudation rates in Prochlorococcus, Limnology and Oceanography, doi: 10.1101.828897
Sanders, R. N. C., Jones, D. C., Josey, S. A., Sinha, B., and Forget, G (2022), Causes of the 2015 North Atlantic cold anomaly in a global state estimate, Ocean Sci., doi: 10.5194/os-18-953-2022
Joseph T. Siddons, Andrew J. Irwin and Zoe V. Finkel (2022), Graphical Analysis of A Marine Plankton Community Reveals Spatial, Temporal, and Niche Structure of Sub-Communities, Front. Mar. Sci., doi: 10.3389/fmars.2022.943540
Tianqi Tang, Shengwei Hou, Jed A Fuhrman, Fengzhu Sun (2022), Phage–bacterial contig association prediction with a convolutional neural network, Bioinformatics, doi: 10.1093/bioinformatics/btac239
Ioannis Tsakalakis, Michael J. Follows, Stephanie Dutkiewicz, Christopher L. Follett, Joseph J. Vallino (2022), Diel light cycles affect phytoplankton competition in the global ocean, Global Ecology and Biogeography, doi: 10.1111/geb.13562
Wakamatsu, L., Britten, G.L., Styles, E.J., Fischer, A.M, (2022), Chlorophyll-a and Sea Surface Temperature Changes in Relation to Paralytic Shellfish Toxin Production off the East Coast of Tasmania, Australia, Remote Sens., doi: 10.3390/rs14030665
JL Weissman, Shengwei Hou and Jed Fuhrman (2022), Using DNA to predict how fast bacteria can grow, Frontiers for Young Minds, doi: 10.3389. frym.2022.714713
Zhen Wu, Dikla Aharonovich, Dalit Roth-Rosenberg, Osnat Weissberg, Tal Luzzatto-Knaan, Angela Vogts, Luca Zoccarato, Falk Eigemann, Hans-Peter Grossart, Maren Voss, Michael J. Follows & Daniel Sher (2022), Single-cell measurements and modelling reveal substantial organic carbon acquisition by Prochlorococcus, Nature Microbiology, doi: 10.1038/s41564-022-01250-5
Zhen Wu and Gael Forget (2022), PlanktonIndividuals.jl: A GPU supported individual-based phytoplankton life cycle model, Journal of Open Source Software, doi: 10.21105/joss.04207
Zhen Wu, Jincheng Li, Yanxin Sun, Josep Peñuelas, Jilin Huang, Jordi Sardans, Qingsong Jiang, Jacques C. Finlay, Gregory L. Britten, Michael J. Follows, Wei Gao, Boqiang Qin, Jinren Ni, Shouliang Huo & Yong Liu (2022), Imbalance of global nutrient cycles exacerbated by the greater retention of phosphorus over nitrogen in lakes, Nature Geosciences, doi: 10.1038/s41561-022-00958-7
Yeh, YC., Fuhrman, J.A. (2022), Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series, ISME Commun., doi: 10.1038/s43705-022-00121-8