CBIOMES researchers Zhen Wu and Gael Forget apply Julia to create a GPU-supported individual-based phytoplankton life cycle model.
Continue reading “A Super-Speedy New Phytoplankton Model”
A Super-Speedy New Phytoplankton Model
NEW CBIOMES PUBLICATION
Jann Paul Mattern, Kristof Glauninger, Gregory L. Britten, John R. Casey, Sangwon Hyun, Zhen Wu, E. Virginia Armbrust, Zaid Harchaoui, Francois Ribalet (2022), A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series, PLoS Computational Biology, doi: 10.1371/journal.pcbi.1009733
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NEW CBIOMES PUBLICATION
Dustin Carroll et al (2022), Attribution of space-time variability in global-ocean dissolved inorganic carbon, Global Biogeochemical Cycles, doi: 10.1029/2021GB007162 (Stephanie Dutkiewicz, Jonathan M. Lauderdale, Chris Hill, Oliver Jahn)
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NEW CBIOMES PUBLICATION
Inès Mangolte, Marina Lévy, Stephanie Dutkiewicz, Sophie Clayton, Oliver Jahn (2022), Plankton community response to fronts: winners and losers, Journal of Plankton Research, doi: 10.1093/plankt/fbac010
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NEW CBIOMES PUBLICATION
Zhengke Li, Yong Zhang, Wei Li, Andrew J Irwin, Zoe V Finkel (2022), Conservation and architecture of housekeeping genes in the model marine diatom Thalassiosira pseudonana, New Phytologist, doi: 10.1111/nph.18039
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NEW CBIOMES PUBLICATION
Simona Meiler, Gregory L. Britten, Stephanie Dutkiewicz, Mary Rose Gradoville, Pia H. Moisander, Oliver Jahn, Michael J. Follows (2022), Constraining uncertainties of diazotroph biogeography from nifH gene abundance, Limnology and Oceanography, doi: 10.1002/lno.12036
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NEW CBIOMES PUBLICATION
Vinitha Ebenezer, Ying-Yu Hu, Olga Carnicer, Andrew J. Irwin, Michael J. Follows, Zoe V. Finkel (2022), Elemental and macromolecular composition of the marine Chloropicophyceae, a major group of oceanic photosynthetic picoeukaryotes, Limnology and Oceanography, doi: 10.1002/lno.12013
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NEW CBIOMES PUBLICATION
Crispin M. Mutshinda, Aditya Mishra, Zoe V. Finkel, Claire E. Widdicombe & Andrew J. Irwin (2022), Bayesian two-part modeling of phytoplankton biomass and occurrence, Hydrobiologia, doi: 10.1007/s10750-021-04789-2
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A Systems Level Approach to Biogeography
Microbial simulations bridge the gap between the molecular and ecosystem scales.
A new CBIOMES paper presents, for the first time, an interpretation of observed, strain-level, basin-scale biogeography using genome-scale modeling of cellular metabolism, physiology, and fitness. Continue reading “A Systems Level Approach to Biogeography”
Plankton’s Place
According to CBIOMES researchers predator interactions chiefly determine where Prochlorococcus thrive – a finding that may help researchers hone predictions for where phytoplankton will migrate with climate change. Continue reading “Plankton’s Place”