Submitted

(Contact hlh@mit.edu to have your paper included here)

(CBIOMES investigators highlighted in bold)

Boysen, Angela K., Laura T. Carlson, Bryndan P. Durham, Ryan D. Groussman, Frank O. Aylward, François Ribalet, Edward F. DeLong, E. Virginia Armbrust, Anitra E. Ingalls (2021), Diel oscillations of particulate metabolites reflect synchronized microbial activity in the North Pacific subtropical gyre, mSystems, in revision.

Brewin, R.J.W., Sathyendranath, S., Platt, T., Bouman, H., Ciavatta, S., Dall’Olmo, G., Dingle, J., Groom, S., Jönsson, B., Kostadinov, T. S., Kulk, G., Laine, M., Martínez-Vicente, V., Psarra, S., Raitsos, D. E., Richardson, K., Rio, M-H., Rousseaux, C., Salisbury, J., Shutler, J. D. & Walker, P. , Sensing the Ocean Biological Carbon Pump from Space: A Review of Capabilities, Concepts, Research Gaps and Future Developments. (Submitted to Earth-Science Reviews.)

Britten G.L., Y. Mohajerani, L. Primeau, M. Aydin, C. Garcia, W. Wang, B. Pasquier, B.B. Cael, F.W. Primeau, Evaluating the benefits of Bayesian hierarchical methods for analyzing heterogeneous environmental datasets: a case study of marine organic carbon fluxes. (Accepted at Frontiers in Environmental Science)

Carlson, Michael G., François Ribalet, Ilia Maidanik, Bryndan P. Durham, Yotam Hulata, Sara Ferrón, Oscar Sosa, Julia Weissenbach, Nitzan Shamir, Svetlana Goldin, Nava Baran, B. B. Cael, David M. Karl, Angelicque E. White, E. Virginia Armbrust, and Debbie Lindell (2021), A virus hotspot at ocean gyre boundaries limits the geographic range of Prochlorococcus, Science, in review.

O. Carnicer, A.J. Irwin, Z.V. Finkel (2021), Traits influence dinoflagellate C:N:P.  Eur. J. Phycology. In review.

Coesel, Sacha. N., Bryndan P. Durham, Ryan D. Groussman, Rhonda L. Morales, François Ribalet and E. Virginia Armbrust (2021), Diel transcription of known and novel light-sensitive regulatory elements in a synchronized open ocean eukaryotic plankton community, PNAS, in press.

Connell, Paige E., François Ribalet, E. Virginia Armbrust, Angelicque White and David A. Caron (2021), Diel oscillations in feeding strategies of heterotrophic and mixotrophic nanoplankton in the North Pacific Subtropical Gyre, Aquatic Microbial Ecology, in press.

Jones, Corinne, Sophie Clayton, François Ribalet, E. Virginia Armbrust, Zaid Harchaoui (2021), Use of Kernel-based Change-Point Estimation with Flow Cytometry Data to Identify Changes in Phytoplankton Communities across the North Pacific Ocean, Methods in Ecology and Evolution, in review.

Follett, C.L., S. DutkiewiczG. Forget, B.B. Cael, M.J. Follows, Moving ecological and biogeochemical transitions across the North Pacific (under review at Limnology and Oceanography)

Heal, Katherine R., Bryndan P. Durham, Angela K. Boysen, Laura T. Carlson, Wei Qin, François Ribalet, Angelicque E. White, Randelle M. Bundy, E. Virginia Armbrust, Anitra E. Ingalls (2021), Community metabolomes reflect taxon-specific fingerprints of phytoplankton in the ocean, mSystems, in review.

Kheireddine, M., Brewin, R.J.W., Ouhssain, M. & Jones, B.J., Particulate scattering and backscattering in relation to the nature of particles in the Red Sea. (Submitted to Journal of Geophysical Research: Oceans.)

Lambert, B., R.D. Groussman, S.N. Coesel, F. Ribalet, A.J. Alverson and E. \V. Armbrust (2021), Machine learning guided determination of protistan trophic mode, PNAS, submitted.

Y. Zhang, Z-K. Li, Schulz, K.G, Y. Hu, A.J. Irwin, Z.V. Finkel (2021), Growth-dependent changes in elemental stoichiometry and macromolecular allocation in the coccolithophore Emiliania huxleyi under different environmental conditions, Limnology and Oceanography, in review.


In Preparation

Casey, J.R., M. Engqvist, C. Müller, R. Boiteau, J. Bien, Z. Finkel, G. Li, J. Liefer, N. Muñoz, and M.J. Follows – Simulating Prochlorococcus growth, metabolism and physiology in the Atlantic Ocean.

Siliangyu Cheng, Shengwei HouJed A. Fuhrman, Fengzhu Sun, DeepEukFinder: a versatile multiclass classifier enables accurate classification of metagenomic contigs.

Shengwei HouAndrew M. LongJesse C. McNichol, Jake L. Weissman, Jed A. Fuhrman – Estimating Marine Microbial Growth Rates through the Lens of Incubation Experiments.

S. Hyun and other members of the CBIOMES Provinces Working Group -Quantitatively comparing the time-space evolution of the surface ocean across scale.

Inomura, K., C. Deutsch, O. Jahn, H. Frenzel, S. Dutkiewicz and M.J. Follows -Marine elemental ratios driven by physiology and ecology of phytoplankton.

Bror Jönsson, C.L. Follett, J. Bien, S. Sathyendranath, S. Dutkiewicz, S. Hyun, G. Kulk, G. Forget, C. Mueller, M. F. Racault, C. N. Hill, T. Jackson – A Distributional Comparison of Model and Satelite Chlorophyll Observations

Liefer, J.D., A. White, Z. Finkel, V. Armbrust, D. Karl, A. Irwin, F. Ribalet, … , M.J. Follows – Phytoplankton macromolecules determine surface particulate C:N:P across an ocean gradient.

Jann Paul Mattern, K. Glauninger, G.L. Britten, J.R. Casey, S. Hyun, E.V. Armbrust, M.J. Follows, Z. Harchaoui, and F. Ribalet – A flexible Bayesian formulation of size-structured matrix population models. (To submit to PLoS Computational Biology)

Mutshinda, C.M., Finkel, Z.V., Widdicombe, C.E. and Irwin, A.J. – Bayesian integration of alternative modes of resource co-limitation to population growth.

Omta, A.-W., J.D. Liefer, Z. Finkel, A. Irwin, D. Sher, and M.J. Follows – A macro-molecular model of algal physiology and elemental composition.

D. Rao, D. Moran, M. McIlvan, Z. Fussy, M.J. Follows, A. Allen, and M. Saito – Proteogenomics reveals the flexible vitamin B12 metabolism of the keystone marine haptophyte Phaeocystis antarctica.

Ribalet, F.S. Dutkiewicz, J. Casey, G. Armbrust, Nutrient and temperature control of Prochlorococcus growth rates.