Simons Collaboration on Computational Biogeochemical Modeling of Marine Ecosystems
In a cross-collaboration, multiple Simons Foundation-funded researchers team up to use genetic data and ecosystem modeling to simplify the complexity of marine microbes to improve climate predictions.
Continue reading “New Study Illuminates Invisible Architects of the Ocean’s Carbon Cycle”
Aditya Mishra, Jesse McNichol, Jed Fuhrman, David Blei, Christian L. Müller (2025), Variational inference for microbiome survey data with application to global ocean data, ISME Communications, doi: 10.1093/ismeco/ycaf062
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New method significantly improves the accuracy of measuring cell counts of marine picocyanobacteria, a crucial component of oceanic ecosystems. Continue reading “Innovative Sequencing Technique Enhances Marine Microbial Research”
Alexandra E. Jones-Kellett, Jesse C. McNichol, Yubin Raut, Kelsy R. Cain, François Ribalet, E. Virginia Armbrust, Michael J. Follows, and Jed A. Fuhrman (2024), Amplicon Sequencing with Internal Standards Yields Accurate Picocyanobacteria Cell Abundances as Validated with Flow Cytometry, ISME Communications, doi: 10.1093/ismeco/ycae115
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Colette Fletcher-Hoppe, Yi-Chun Yeh, Yubin Raut, J. L. Weissman & Jed A. Fuhrman (2023), Symbiotic UCYN-A strains co-occurred with El Niño, relaxed upwelling, and varied eukaryotes over 10 years off Southern California, ISME COMMUN., doi: 10.1038/s43705-023-00268-y
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Yuxuan Du, Jed A. Fuhrman & Fengzhu Sun (2023), ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data, Nature Communications, doi: 10.1038/s41467-023-35945-y
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JL Weissman, Shengwei Hou and Jed Fuhrman (2022), Using DNA to predict how fast bacteria can grow, Frontiers for Young Minds, doi: 10.3389. frym.2022.714713
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Tianqi Tang, Shengwei Hou, Jed A Fuhrman, Fengzhu Sun (2022), Phage–bacterial contig association prediction with a convolutional neural network, Bioinformatics, doi: 10.1093/bioinformatics/btac239
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Felix Milke, Selene Sanchez-Garcia, Leon Dlugosch, Jesse McNichol, Jed Fuhrman, Meinhard Simon, Irene Wagner-Döbler (2022), Composition and Biogeography of Planktonic Pro- and Eukaryotic Communities in the Atlantic Ocean: Primer Choice Matters, Frontiers in Microbiology, doi: 10.3389/fmicb.2022.895875
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