Growth rates are central to understanding microbial interactions and community dynamics. The Fuhrman Lab, which uses ‘omics data to seek a better understanding of microbial growth, interactions, and biogeographies has been evaluating a promising new approach to simultaneously determine the growth rates of many different kinds of microbes from the within-genome distributions of DNA extracted from in-situ (mixed) ocean populations. Continue reading “Using Metagenomics to Measure In-Situ Microbial Growth Rates”
NEW CBIOMES PUBLICATION
Long, Andrew M., Shengwei Hou, J. Cesar Ignacio-Espinoza, Jed A. Fuhrman (2020), Benchmarking microbial growth rate predictions from metagenomes, ISME Journal, doi: 10.1038/s41396-020-00773-1
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The Fuhrman Group go to Annual Meeting
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NEW CBIOMES PUBLICATION
Weili Wang, Jie Ren, Kujin Tang, Emily Dart, Julio Cesar Ignacio-Espinoza, Jed A. Fuhrman, Jonathan Braun, Fengzhu Sun, and Nathan A. Ahlgren (2020), A network-based integrated framework for predicting virus–prokaryote interactions, NAR Genomics and Bioinformatics, doi: 10.1093/nargab/lqaa044
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2020 Annual Meeting e-poster: Measuring Marine Microbial Growth Rates using Laboratory Incubation Experiments – Shengwei Hou (USC)
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2020 Annual Meeting e-poster: Specific virus-host interactions identified using proximity ligation – Sarah Laperriere (USC, Fuhrman Lab)
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2020 Annual Meeting e-poster: Proximity ligation links gene expression to finely defined taxonomic units – Julio Cesar Ignacio Espinoza (USC, Fuhrman Lab)
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2020 Annual Meeting e-poster: Using Global Microbial Observations from Universal PCR Primers to Integrate Models and Data – Jesse McNichol (USC)
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2020 Annual Meeting e-poster: Accurate Prediction of Microbial Growth Rates With Codon Usage Statistics – Jake Weissman (USC, Fuhrman Lab)
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May 2020 CBIOMES e-meeting – Jed Fuhrman (USC)
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