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The Fuhrman Lab goes to Annual Meeting 2021
2021 Annual Meeting microtalk – DNA Tags + Metagenomes for Whole Community Analysis – Delaney Nolin (USC)
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2021 Annual Meeting microtalk – Exploring differences in microbial community structure across the Gulf Stream front on a small spatial scale – Alexandre (Rae) Santora (USC)
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2021 Annual Meeting microtalk: Progress & prospects for using universal primers in modelling work – Jesse McNichol (USC)
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2021 Annual Meeting microtalk: Predicting maximal growth rates from genomes and metagenomes for prokaryotes and eukaryotes – Jake Weissman (USC Guest)
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2021 Annual Meeting microtalk: A Metagenomic Survey of Prokaryote, Eukaryote and Virus Patterns in the Open Oceans, and Implications for Virus Infection Patterns – Shengwei Hou (USC)
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NEW CBIOMES PUBLICATION
Yi-Chun Yeh, Jesse C McNichol, David M Needham, Erin B Fichot, Jed A Fuhrman, Comprehensive single-PCR 16S and 18S rRNA community analysis validated with mock communities and denoising algorithms, Envir. Microbiol., doi: 10.1111/1462-2920.15553
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NEW CBIOMES PUBLICATION
Weissman, Jake L, Shengwei Hou, Jed A Fuhrman (2021), Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns, PNAS, doi: 10.1073/pnas.2016810118
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Using Metagenomics to Measure In-Situ Microbial Growth Rates
Growth rates are central to understanding microbial interactions and community dynamics. The Fuhrman Lab, which uses ‘omics data to seek a better understanding of microbial growth, interactions, and biogeographies has been evaluating a promising new approach to simultaneously determine the growth rates of many different kinds of microbes from the within-genome distributions of DNA extracted from in-situ (mixed) ocean populations. Continue reading “Using Metagenomics to Measure In-Situ Microbial Growth Rates”
NEW CBIOMES PUBLICATION
Long, Andrew M., Shengwei Hou, J. Cesar Ignacio-Espinoza, Jed A. Fuhrman (2020), Benchmarking microbial growth rate predictions from metagenomes, ISME Journal, doi: 10.1038/s41396-020-00773-1
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