Aditya Mishra, Jesse McNichol, Jed Fuhrman, David Blei, Christian L. Müller (2025), Variational inference for microbiome survey data with application to global ocean data, ISME Communications, doi: 10.1093/ismeco/ycaf062
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Innovative Sequencing Technique Enhances Marine Microbial Research
New method significantly improves the accuracy of measuring cell counts of marine picocyanobacteria, a crucial component of oceanic ecosystems. Continue reading “Innovative Sequencing Technique Enhances Marine Microbial Research”
NEW CBIOMES PUBLICATION
Alexandra E. Jones-Kellett, Jesse C. McNichol, Yubin Raut, Kelsy R. Cain, François Ribalet, E. Virginia Armbrust, Michael J. Follows, and Jed A. Fuhrman (2024), Amplicon Sequencing with Internal Standards Yields Accurate Picocyanobacteria Cell Abundances as Validated with Flow Cytometry, ISME Communications, doi: 10.1093/ismeco/ycae115
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NEW CBIOMES PUBLICATION
Felix Milke, Selene Sanchez-Garcia, Leon Dlugosch, Jesse McNichol, Jed Fuhrman, Meinhard Simon, Irene Wagner-Döbler (2022), Composition and Biogeography of Planktonic Pro- and Eukaryotic Communities in the Atlantic Ocean: Primer Choice Matters, Frontiers in Microbiology, doi: 10.3389/fmicb.2022.895875
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2022 Annual Meeting microtalk – “Predicting Maximum Growth Rates from the Genomes and Metagenomes for Prokaryotes and Eukaryotes” – J.L. Weissman (USC – Fuhrman)
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2022 Annual Meeting microtalk – “Full-Community Metabarcoding: An Ecosystem Map” – Jesse McNichol (USC – Fuhrman)
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2022 Annual Meeting microtalk – “A novel intercomparison of major phytoplankton functional types from trait-based marine ecosystem model with exact amplicon sequence variants” – Yubin Raut (USC – Fuhrman)
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Basin-scale biogeography with 3-domain ASVs – Jesse McNichol (USC)
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Potential influence of geochemical variates on comparisons between DARWIN phytoplankton abundance with 16s rRNA amplicon abundance – Yubin Raut (USC)
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Fast, Focussed, and Future Forward
The 2021 CBIOMES Annual Meeting provided a short, streamlined opportunity for members to refamiliarize themselves with progress over the past twelve months, learn in more depth about current activity, and hear and weigh ideas for new directions. Continue reading “Fast, Focussed, and Future Forward”