Aditya Mishra, Jesse McNichol, Jed Fuhrman, David Blei, Christian L. Müller (2025), Variational inference for microbiome survey data with application to global ocean data, ISME Communications, doi: 10.1093/ismeco/ycaf062
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Ocean Mover’s Distance: Using Optimal Transport for Analyzing Oceanographic Data – Sangwon Hyun (USC – Bien)
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A Systems Level Approach to Biogeography
Microbial simulations bridge the gap between the molecular and ecosystem scales.
A new CBIOMES paper presents, for the first time, an interpretation of observed, strain-level, basin-scale biogeography using genome-scale modeling of cellular metabolism, physiology, and fitness. Continue reading “A Systems Level Approach to Biogeography”
NEW CBIOMES PUBLICATION
Jacob Bien, Yan, X., Simpson, L., Christian L. Müller (2021), Tree-aggregated predictive modeling of microbiome data, Scientific Reports, doi: 10.1038/s41598-021-93645-3
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The Müller Group goes to Annual Meeting 2021
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2021 Annual Meeting microtalk: Use Earth Movers Distances to Compare Biogeochemical Models and Satellite Derived Chlorophyll – Bror Jönsson (PML)
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2021 Annual Meeting microtalk: The CBIOMES Climatology – Bror Jönsson (PML)
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2021 Annual Meeting microtalk: Simulating microbial growth, metabolism and physiology – John Casey (MIT)
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The Müller Group goes to Annual Meeting
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2020 Annual Meeting e-poster: Pangenome-scale simulation of growth, metabolism and physiological acclimation of Prochlorococcus strains across a meridional transect – John Casey (MIT)
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