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Simons Collaboration on Computational Biogeochemical Modeling of Marine Ecosystems

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Tag: Zhen-Wu

Posted on June 7, 2022June 16, 2022

2022 Annual Meeting microtalk – “An individual-based model of macromolecular allocation in phytoplankton” – Zhen Wu (MIT)

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Posted on May 19, 2022

Interpreting microbial growth rates from size distributions.

A multi-lab collaboration that grew out of the January 2020 Bayesian Workshop finds using the Bayesian approach can yield more realistic biological models and better constrained cellular growth rates. Continue reading “Interpreting microbial growth rates from size distributions.”

Posted on May 19, 2022May 19, 2022

A Super-Speedy New Phytoplankton Model

CBIOMES researchers Zhen Wu and Gael Forget apply Julia to create a GPU-supported individual-based phytoplankton life cycle model.
Continue reading “A Super-Speedy New Phytoplankton Model”

Posted on April 19, 2022

April 2022 CBIOMES e-meeting Zhen Wu (MIT)

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Posted on March 15, 2022April 28, 2022

NEW CBIOMES PUBLICATION

Jann Paul Mattern, Kristof Glauninger, Gregory L. Britten, John R. Casey, Sangwon Hyun, Zhen Wu, E. Virginia Armbrust, Zaid Harchaoui, Francois Ribalet (2022), A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series, PLoS Computational Biology, doi: 10.1371/journal.pcbi.1009733

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Posted on January 27, 2022February 3, 2022

Significant organic carbon acquisition by Prochlorococcus in the oceans – Zhen Wu (MIT)

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Posted on September 22, 2021September 22, 2021

NEW CBIOMES PUBLICATION

Zhen Wu, Stephanie Dutkiewicz, Oliver Jahn, Daniel Sher, Angelicque White, Michael J. Follows (2021), Modeling Photosynthesis and Exudation in Subtropical Oceans, Global Biogeochemical Cycles, doi: 10.1029/2021GB006941

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Posted on August 4, 2021August 4, 2021

CBIOMES Goes to JuliaCon 2021

From agent-based models to exploring individual microbes and processes that drive species interactions to simulating planetary-scale transports that control ocean biogeography and climate change CBIOMES shared their Julia-based marine microbe and biogeochemical modeling know-how at this year’s Julia programming language conference.

Continue reading “CBIOMES Goes to JuliaCon 2021”

Posted on July 15, 2021July 15, 2021

The Follows Group goes to Annual Meeting 2021

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Posted on June 8, 2021July 14, 2021

2021 Annual Meeting microtalk: PlanktonIndividuals.jl: A GPU supported individual-based phytoplankton life cycle model – Zhen Wu (MIT)

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