Simons Collaboration on Computational Biogeochemical Modeling of Marine Ecosystems
Shubha Sathyendranath, Trevor Platt, Žarko Kovač, James Dingle, Thomas Jackson, Robert J. W. Brewin, Peter Franks, Emilio Marañón, Gemma Kulk, and Heather A. Bouman (2020), Reconciling models of primary production and photo-acclimation, Applied Optics, doi: 10.1364/AO.386252
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Crispin M. Mutshinda, Andrew J. Irwin, Mikko J. Sillanpää (2020), A Bayesian Framework for Robust Quantitative Trait Locus Mapping and Outlier Detection, The International Journal of Biostatistics, doi: 10.1515/ijb-2019-0038
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Study involving members of MIT-CBIOMES finds Earth’s oceans contain just the right amount of iron; adding more may not improve their ability to absorb carbon dioxide. Continue reading “Seeding Oceans With Iron May Not Impact Climate Change”
In a new paper, MIT-CBIOMES investigator Stephanie Dutkiewicz and collaborators use the Darwin ecosystem model to develop theories seeking to explain and predict phytoplankton biogeography.
Continue reading “Exploring Phytoplankton Diversity”
Jie Ren, Kai Song, Chao Deng, Nathan A. Ahlgren, Jed A. Fuhrman, Yi Li, Xiaohui Xie, Ryan Poplin & Fengzhu Sun (2020), Identifying viruses from metagenomic data using deep learning, Quantitative Biology, doi: 10.1007/s40484-019-0187-4
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C. Mutshinda, C. Widdicombe, Z.V. Finkel, A.J. Irwin (2019), Bayesian inference to partition determinants of community dynamics from observational time series, Community Ecology, doi: 10.1556/168.2019.20.3.4
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Reporting by Helen Hill for CBIOMES
Senior Research Scientist Francois Ribalet and his team use underway flow cytometry to collect information about the abundance and size of small phytoplankton in the surface ocean. In a new paper published in the journal Scientific Data Ribalet, together with others from the UW-CBIOMES team and elsewhere, share their compilation of Northeast Pacific Ocean underway flow cytometry data collected over the past decade. Continue reading “In the Flow”
Keisuke Inomura, Curtis Deutsch, Samuel T. Wilson, Takako Masuda, Evelyn Lawrenz, Bučinská Lenka, Roman Sobotka, Julia M. Gauglitz, Mak A. Saito, Ondřej Prášil, Michael J. Follows (2019), Quantifying Oxygen Management and Temperature and Light Dependencies of Nitrogen Fixation by Crocosphaera watsonii, mSphere, doi: 10.1128/mSphere.00531-19
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Members of the USC-CBIOMES Group J. Cesar Ignacio-Espinoza, and Jed A. Fuhrman, have found that the endless struggle between viruses and bacteria ends in a stalemate, scientific proof of the evolutionary principle known as the “Red Queen.”
Continue reading “Germ Warfare Between Bacteria and Viruses at a Standoff”
CBIOMES postdoctoral fellow John Casey is a Microbial Oceanographer who combines observations, experimental approaches, and computational methods to better understand the diversity of metabolic and physiological designs that influence biogeochemical cycles.
Continue reading “Relating Marine Picoplankton Cell Size and Metabolism”