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Surface Area Limitation – a special case of nutrient limitation – John Casey (MIT)
November 2020 CBIOMES e-meeting – John Casey (MIT)
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Towards a Better Model for the Microbe Membrane (Revisited)
Postdoc John Casey continues to work closely with MIT-CBIOMES Group PI Mick Follows on research combining quantitative proteomics, flux balance analysis, and molecular modeling of membrane transports to develop a steady-state model of microbial acclimation to substrate limitation. A paper by the same name was recently published in PLOS Computational Biology. Continue reading “Towards a Better Model for the Microbe Membrane (Revisited)”
NEW CBIOMES PUBLICATION
John Casey and Michael J. Follows (2020), A steady-state model of microbial acclimation to substrate limitation, PLoS Computational Biology, doi: 10.1371/journal.pcbi.1008140
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2020 Annual Meeting e-poster: Pangenome-scale simulation of growth, metabolism and physiological acclimation of Prochlorococcus strains across a meridional transect – John Casey (MIT)
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2020 Annual Meeting e-poster: A Bayesian Approach to Size-structured Matrix Population Model – Francois Ribalet (UW)
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CBIOMES Goes to Ocean Sciences 2020
Look out for members of the CBIOMES team, sharing their work at this year’s Ocean Sciences conference taking place February 16-21 in San Diego, California. Continue reading “CBIOMES Goes to Ocean Sciences 2020”
Relating Marine Picoplankton Cell Size and Metabolism
CBIOMES postdoctoral fellow John Casey is a Microbial Oceanographer who combines observations, experimental approaches, and computational methods to better understand the diversity of metabolic and physiological designs that influence biogeochemical cycles.
Continue reading “Relating Marine Picoplankton Cell Size and Metabolism”
Towards a Better Model for the Microbe Membrane
by John Casey for CBIOMES
CBIOMES Postdoctoral Fellow John Casey, has been working closely with MIT Group PI Mick Follows to combine quantitative proteomics, flux balance analysis of genome-scale metabolic models (GEMs), and molecular modeling in an attempt to estimate the parameters of a kinetic model based on transport fluxes, transporter abundances and structures, molecular diffusivity, and microscale fluid dynamics. Continue reading “Towards a Better Model for the Microbe Membrane”