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RiboTag-Seq: Next Generation in situ microbial physiology – J. Cesar Ignacio Espinoza (USC)
Using Metagenomics to Measure In-Situ Microbial Growth Rates
Growth rates are central to understanding microbial interactions and community dynamics. The Fuhrman Lab, which uses ‘omics data to seek a better understanding of microbial growth, interactions, and biogeographies has been evaluating a promising new approach to simultaneously determine the growth rates of many different kinds of microbes from the within-genome distributions of DNA extracted from in-situ (mixed) ocean populations. Continue reading “Using Metagenomics to Measure In-Situ Microbial Growth Rates”
NEW CBIOMES PUBLICATION
Long, Andrew M., Shengwei Hou, J. Cesar Ignacio-Espinoza, Jed A. Fuhrman (2020), Benchmarking microbial growth rate predictions from metagenomes, ISME Journal, doi: 10.1038/s41396-020-00773-1
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NEW CBIOMES PUBLICATION
Weili Wang, Jie Ren, Kujin Tang, Emily Dart, Julio Cesar Ignacio-Espinoza, Jed A. Fuhrman, Jonathan Braun, Fengzhu Sun, and Nathan A. Ahlgren (2020), A network-based integrated framework for predicting virus–prokaryote interactions, NAR Genomics and Bioinformatics, doi: 10.1093/nargab/lqaa044
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2020 Annual Meeting e-poster: Proximity ligation links gene expression to finely defined taxonomic units – Julio Cesar Ignacio Espinoza (USC, Fuhrman Lab)
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February 2020 CBCBIOMES e-meeting – Julio Cesar Ignacio Espinoza (USC-Fuhrman)
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CBIOMES Goes to Ocean Sciences 2020
Look out for members of the CBIOMES team, sharing their work at this year’s Ocean Sciences conference taking place February 16-21 in San Diego, California. Continue reading “CBIOMES Goes to Ocean Sciences 2020”
Germ Warfare Between Bacteria and Viruses at a Standoff
Members of the USC-CBIOMES Group J. Cesar Ignacio-Espinoza, and Jed A. Fuhrman, have found that the endless struggle between viruses and bacteria ends in a stalemate, scientific proof of the evolutionary principle known as the “Red Queen.”
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