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Simons Collaboration on Computational Biogeochemical Modeling of Marine Ecosystems

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Tag: Fuhrman

Posted on June 29, 2020November 30, 2020

NEW CBIOMES PUBLICATION

Weili Wang, Jie Ren, Kujin Tang, Emily Dart, Julio Cesar Ignacio-Espinoza, Jed A. Fuhrman, Jonathan Braun, Fengzhu Sun, and Nathan A. Ahlgren (2020), A network-based integrated framework for predicting virus–prokaryote interactions, NAR Genomics and Bioinformatics, doi: 10.1093/nargab/lqaa044

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Posted on May 26, 2020July 8, 2020

2020 Annual Meeting e-poster: Measuring Marine Microbial Growth Rates using Laboratory Incubation Experiments – Shengwei Hou (USC)

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Posted on May 26, 2020July 8, 2020

2020 Annual Meeting e-poster: Specific virus-host interactions identified using proximity ligation – Sarah Laperriere (USC, Fuhrman Lab)

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Posted on May 26, 2020July 8, 2020

2020 Annual Meeting e-poster: Proximity ligation links gene expression to finely defined taxonomic units – Julio Cesar Ignacio Espinoza (USC, Fuhrman Lab)

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Posted on May 26, 2020June 10, 2021

2020 Annual Meeting e-poster: Using Global Microbial Observations from Universal PCR Primers to Integrate Models and Data – Jesse McNichol (USC)

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Posted on May 26, 2020July 8, 2020

2020 Annual Meeting e-poster: Accurate Prediction of Microbial Growth Rates With Codon Usage Statistics – Jake Weissman (USC, Fuhrman Lab)

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Posted on May 11, 2020May 12, 2020

May 2020 CBIOMES e-meeting – Jed Fuhrman (USC)

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Posted on February 3, 2020March 10, 2020

NEW CBIOMES PUBLICATION

Jie Ren, Kai Song, Chao Deng, Nathan A. Ahlgren, Jed A. Fuhrman, Yi Li, Xiaohui Xie, Ryan Poplin & Fengzhu Sun (2020), Identifying viruses from metagenomic data using deep learning, Quantitative Biology, doi: 10.1007/s40484-019-0187-4

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Posted on January 9, 2020October 11, 2023

CBIOMES Goes to Ocean Sciences 2020

Look out for members of the CBIOMES team, sharing their work at this year’s Ocean Sciences conference taking place February 16-21 in San Diego, California. Continue reading “CBIOMES Goes to Ocean Sciences 2020”

Posted on December 11, 2019March 10, 2020

Germ Warfare Between Bacteria and Viruses at a Standoff

Members of the USC-CBIOMES Group J. Cesar Ignacio-Espinoza, and Jed A. Fuhrman, have found that the endless struggle between viruses and bacteria ends in a stalemate, scientific proof of the evolutionary principle known as the “Red Queen.”

Continue reading “Germ Warfare Between Bacteria and Viruses at a Standoff”

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